Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR76084.1Uncharacterized protein Q1 colocalized with Q. (198 aa)    
Predicted Functional Partners:
EPR76085.1
Ribonuclease D.
 
    0.955
EPR76094.1
Hypothetical protein.
  
     0.755
EPR75527.1
Transcriptional regulator, MerR family.
  
     0.719
whiA
Cytoplasmic hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.702
EPR76135.1
Hypothetical protein.
  
     0.701
EPR75539.1
Membrane protein.
  
     0.694
EPR75555.1
Putative membrane protein.
  
     0.675
EPR76095.1
Hypothetical protein.
  
     0.642
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.639
EPR76083.1
Secreted protein.
       0.631
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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