Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR76099.1Hypothetical protein. (76 aa)    
Predicted Functional Partners:
EPR76098.1
Topoisomerase IV subunit B.
 
     0.641
EPR76100.1
Putative hexapeptide transferase family protein.
       0.611
EPR75631.1
DNA or RNA helicases of superfamily II.
  
     0.543
EPR75799.1
Hypothetical protein.
  
     0.538
EPR75989.1
Membrane-associated zinc metalloprotease.
  
     0.518
EPR75078.1
Hypothetical protein.
  
     0.505
EPR77313.1
Hypothetical protein.
  
     0.497
EPR75599.1
Peptidylprolyl isomerase.
  
     0.479
EPR75430.1
Arogenate dehydrogenase.
  
     0.461
EPR76091.1
Hypothetical protein.
  
     0.418
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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