Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR76135.1Hypothetical protein. (167 aa)    
Predicted Functional Partners:
EPR76134.1
Hypothetical protein.
       0.778
EPR76873.1
Hypothetical protein.
  
     0.708
EPR77601.1
Hypothetical protein.
  
     0.701
EPR76084.1
Uncharacterized protein Q1 colocalized with Q.
  
     0.701
EPR76094.1
Hypothetical protein.
  
     0.584
EPR77118.1
Periplasmic molybdate-binding protein.
  
     0.582
EPR75527.1
Transcriptional regulator, MerR family.
  
     0.553
EPR75555.1
Putative membrane protein.
  
     0.552
EPR75631.1
DNA or RNA helicases of superfamily II.
  
     0.544
EPR76338.1
Putative secreted protein.
  
     0.536
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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