Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR75960.1Hypothetical protein. (169 aa)    
Predicted Functional Partners:
atpD
ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
       0.716
EPR75959.1
ATP synthase epsilon chain.
       0.716
EPR76991.1
Hypothetical protein.
  
     0.657
EPR76978.1
Mucin-like protein 1 precursor.
  
     0.635
EPR76765.1
Hypothetical protein.
  
     0.621
EPR77258.1
Hypothetical protein.
  
     0.606
EPR77635.1
Trehalose-6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.603
EPR75961.1
UPF0246 protein YaaA; Belongs to the UPF0246 family.
       0.587
EPR76850.1
Large Ala/Glu-rich protein.
  
     0.576
EPR75523.1
Hypothetical protein.
  
     0.574
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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