Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EPR75997.1Transcriptional regulator, TetR family. (218 aa)    
Predicted Functional Partners:
EPR75999.1
Hydrolase, alpha/beta fold family.
 
     0.931
EPR75991.1
Branched-chain amino acid ABC transporter, amino acid-binding protein; TCDB 3.A.1.4.1.
 
     0.913
EPR75995.1
Branched-chain amino acid transport system permease protein LivM; TCDB 3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
 
     0.891
EPR75992.1
Branched-chain amino acid transport ATP-binding protein LivG; TCDB 3.A.1.4.1.
 
     0.889
EPR75993.1
Branched-chain amino acid transport ATP-binding protein LivF; TCDB 3.A.1.4.1.
 
     0.877
EPR75994.1
High-affinity branched-chain amino acid transport system permease protein LivH; TCDB 3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
 
     0.871
EPR75996.1
Long-chain-fatty-acid--CoA ligase.
 
     0.861
EPR75998.1
D-beta-hydroxybutyrate dehydrogenase.
 
     0.850
EPR76002.1
Beta-ketoadipate enol-lactone hydrolase.
 
     0.822
EPR76000.1
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A.
       0.781
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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