Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR75926.1Two-component system, sensor protein. (387 aa)    
Predicted Functional Partners:
EPR75927.1
Hypothetical protein.
 
     0.954
EPR75928.1
Two-component system, regulatory protein.
 
  0.944
EPR76752.1
Hypothetical protein.
  
 0.849
EPR77393.1
Two-component system, regulatory protein.
  
  0.804
EPR76596.1
Two-component system, regulatory protein.
 
  0.801
EPR76598.1
Hypothetical protein.
 
     0.788
EPR76887.1
Hypothetical protein.
  
     0.766
EPR76037.1
Hypothetical protein.
  
     0.722
EPR77465.1
Very large tegument protein.
  
     0.720
EPR76043.1
Hypothetical protein.
  
     0.701
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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