Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EPR75689.1Exoenzymes regulatory protein AepA precursor. (548 aa)    
Predicted Functional Partners:
EPR75688.1
ABC transporter, periplasmic spermidine putrescine-binding protein PotD; TCDB 3.A.1.11.1.
       0.749
EPR75686.1
Spermidine Putrescine ABC transporter permease component PotB; TCDB 3.A.1.11.1.
       0.748
EPR75685.1
Putrescine transport ATP-binding protein PotA; TCDB 3.A.1.11.1; Belongs to the ABC transporter superfamily.
       0.746
EPR75687.1
Spermidine Putrescine ABC transporter permease component potC; TCDB _3.A.1.11.1.
       0.746
EPR76097.1
Topoisomerase IV subunit A.
     
  0.682
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
     
  0.682
ychF
GTP-binding and nucleic acid-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.636
EPR75691.1
Hypothetical protein.
       0.408
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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