Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR75795.1O-antigen export system permease protein RfbD. (266 aa)    
Predicted Functional Partners:
EPR75794.1
Polysaccharide ABC transporter, ATP-binding protein.
 
 0.999
EPR76222.1
Glutamine transport system permease protein GlnP; TCDB 3.A.1.3.2.
    
  0.886
EPR77367.1
ABC-2:Amidohydrolase.
    
  0.884
EPR76317.1
Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC; TCDB 3.A.1.1.3; Belongs to the ABC transporter superfamily.
   
 
  0.884
EPR76182.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
  
  
  0.883
EPR76877.1
ATPase component protein.
     
  0.879
EPR76897.1
L-proline glycine betaine ABC transport system permease protein ProW; TCDB 3.A.1.12.1.
     
  0.879
EPR76898.1
L-proline glycine betaine ABC transport system permease protein ProW; TCDB 3.A.1.12.1.
     
  0.879
EPR76956.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
     
  0.879
EPR75713.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
     
  0.879
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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