Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (396 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase.
 
 
 0.997
EPR75272.1
PTS system, fructose-specific IIB component; PTS system, fructose-specific IIC component.
     
 0.923
EPR75813.1
Beta-glucosidase.
    
 0.848
EPR77237.1
Putative sugarkinase.
    
 0.840
EPR75812.1
Xylose-responsive transcription regulator, ROK family.
 
  
 0.818
EPR76603.1
UDP-glucose dehydrogenase.
     
 0.756
tdh
L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
     
 0.711
EPR76357.1
Putative 2,3-butanediol dehydrogenase.
     
 0.711
EPR75842.1
L-rhamnose isomerase.
  
  
 0.696
EPR75179.1
Beta-galactosidase.
 
  
 0.645
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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