Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EPR75812.1Xylose-responsive transcription regulator, ROK family. (415 aa)    
Predicted Functional Partners:
EPR75272.1
PTS system, fructose-specific IIB component; PTS system, fructose-specific IIC component.
    
 0.912
EPR75813.1
Beta-glucosidase.
 
 
 0.864
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.818
EPR76118.1
Polyphosphate glucokinase.
  
  
  0.797
EPR76257.1
Glucosamine-6-phosphate deaminase.
 
  
 0.758
EPR77338.1
Alpha-glucosidase.
 
  
 0.708
EPR75811.1
L-arabinose transport system permease protein; TCDB 3.A.1.2.2; Belongs to the binding-protein-dependent transport system permease family.
       0.701
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.
 
  
 0.697
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.693
EPR75213.1
Fructose-bisphosphate aldolase class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
    
 0.688
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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