Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR75820.1Hypothetical protein. (60 aa)    
Predicted Functional Partners:
EPR75821.1
Hypothetical protein.
 
     0.955
EPR75822.1
Putative membrane/secreted protein.
 
     0.939
EPR75823.1
Hypothetical protein.
 
     0.903
EPR75817.1
Flp pilus assembly protein TadB.
 
     0.882
EPR75818.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
     0.869
EPR77620.1
Hypothetical protein.
  
     0.770
EPR77621.1
Flagellar synthesis regulator FleN.
  
     0.761
EPR77619.1
Excisionase.
  
     0.749
EPR77618.1
Hypothetical protein.
  
     0.722
EPR75784.1
Hypothetical protein.
  
     0.709
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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