Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR75822.1Putative membrane/secreted protein. (148 aa)    
Predicted Functional Partners:
EPR75823.1
Hypothetical protein.
 
     0.960
EPR75821.1
Hypothetical protein.
 
     0.947
EPR75820.1
Hypothetical protein.
 
     0.939
EPR75817.1
Flp pilus assembly protein TadB.
 
     0.876
EPR75818.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
     0.874
EPR77620.1
Hypothetical protein.
  
     0.774
EPR77621.1
Flagellar synthesis regulator FleN.
  
     0.774
EPR77618.1
Hypothetical protein.
  
     0.772
EPR77619.1
Excisionase.
  
     0.769
EPR76374.1
Hypothetical protein; Belongs to the WXG100 family.
  
     0.755
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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