Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR75823.1Hypothetical protein. (147 aa)    
Predicted Functional Partners:
EPR75822.1
Putative membrane/secreted protein.
 
     0.960
EPR75821.1
Hypothetical protein.
 
     0.944
EPR75820.1
Hypothetical protein.
 
     0.903
EPR75817.1
Flp pilus assembly protein TadB.
 
     0.853
EPR75818.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
     0.838
EPR75784.1
Hypothetical protein.
 
     0.774
EPR77620.1
Hypothetical protein.
  
     0.767
EPR77618.1
Hypothetical protein.
  
     0.763
EPR77621.1
Flagellar synthesis regulator FleN.
  
     0.757
EPR76374.1
Hypothetical protein; Belongs to the WXG100 family.
  
     0.748
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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