EPR75521.1 protein (Leifsonia rubra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EPR75521.1

Putative glutathione S-transferase-related transmembrane protein. (161 aa)

Predicted Functional Partners:

EPR75520.1

0.950

EPR75519.1

0.472

EPR75518.1

0.467

EPR75516.1

0.464

EPR75517.1

0.452

EPR75610.1

0.440

Your Current Organism:

Leifsonia rubra

NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPR75516.1	EPR75517.1	ADILRU_2059	ADILRU_2060	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	0.944
EPR75516.1	EPR75518.1	ADILRU_2059	ADILRU_2061	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	0.994
EPR75516.1	EPR75519.1	ADILRU_2059	ADILRU_2062	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	TesB-like acyl-CoA thioesterase 5; Overlaps CDS with the same product name.	0.548
EPR75516.1	EPR75520.1	ADILRU_2059	ADILRU_2063	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Transcriptional regulator, ArsR family.	0.535
EPR75516.1	EPR75521.1	ADILRU_2059	ADILRU_2064	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Putative glutathione S-transferase-related transmembrane protein.	0.464
EPR75517.1	EPR75516.1	ADILRU_2060	ADILRU_2059	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	0.944
EPR75517.1	EPR75518.1	ADILRU_2060	ADILRU_2061	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	0.946
EPR75517.1	EPR75519.1	ADILRU_2060	ADILRU_2062	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	TesB-like acyl-CoA thioesterase 5; Overlaps CDS with the same product name.	0.548
EPR75517.1	EPR75520.1	ADILRU_2060	ADILRU_2063	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Transcriptional regulator, ArsR family.	0.441
EPR75517.1	EPR75521.1	ADILRU_2060	ADILRU_2064	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Putative glutathione S-transferase-related transmembrane protein.	0.452
EPR75518.1	EPR75516.1	ADILRU_2061	ADILRU_2059	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	0.994
EPR75518.1	EPR75517.1	ADILRU_2061	ADILRU_2060	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	0.946
EPR75518.1	EPR75519.1	ADILRU_2061	ADILRU_2062	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	TesB-like acyl-CoA thioesterase 5; Overlaps CDS with the same product name.	0.548
EPR75518.1	EPR75520.1	ADILRU_2061	ADILRU_2063	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Transcriptional regulator, ArsR family.	0.465
EPR75518.1	EPR75521.1	ADILRU_2061	ADILRU_2064	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	Putative glutathione S-transferase-related transmembrane protein.	0.467
EPR75519.1	EPR75516.1	ADILRU_2062	ADILRU_2059	TesB-like acyl-CoA thioesterase 5; Overlaps CDS with the same product name.	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	0.548
EPR75519.1	EPR75517.1	ADILRU_2062	ADILRU_2060	TesB-like acyl-CoA thioesterase 5; Overlaps CDS with the same product name.	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	0.548
EPR75519.1	EPR75518.1	ADILRU_2062	ADILRU_2061	TesB-like acyl-CoA thioesterase 5; Overlaps CDS with the same product name.	Radical SAM domain protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.	0.548
EPR75519.1	EPR75520.1	ADILRU_2062	ADILRU_2063	TesB-like acyl-CoA thioesterase 5; Overlaps CDS with the same product name.	Transcriptional regulator, ArsR family.	0.496
EPR75519.1	EPR75521.1	ADILRU_2062	ADILRU_2064	TesB-like acyl-CoA thioesterase 5; Overlaps CDS with the same product name.	Putative glutathione S-transferase-related transmembrane protein.	0.472