Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EPR75530.1Hypothetical protein. (431 aa)    
Predicted Functional Partners:
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.832
EPR76379.1
Putative DNA-binding protein.
  
     0.613
EPR75529.1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
       0.579
EPR75481.1
Putative thioredoxin.
 
 
   0.560
EPR76330.1
Integral membrane protein.
 
  
 0.527
EPR75818.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
  
 
 0.521
EPR76331.1
Flp pilus assembly protein, ATPase CpaF.
  
 
  0.512
EPR75816.1
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.
  
 
  0.512
EPR75528.1
Chromosome (plasmid) partitioning protein ParA.
 
  
 0.512
EPR76408.1
Hypothetical protein.
  
    0.503
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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