Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EPR75683.1Response regulator receiver. (201 aa)    
Predicted Functional Partners:
EPR77622.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
   
 0.830
EPR76496.1
Branched-chain amino acid ABC transporter, amino acid-binding protein; TCDB 3.A.1.4.1.
  
   0.675
EPR76497.1
Branched-chain amino acid ABC transporter, amino acid-binding protein; TCDB 3.A.1.4.1.
  
   0.675
EPR75991.1
Branched-chain amino acid ABC transporter, amino acid-binding protein; TCDB 3.A.1.4.1.
  
   0.675
EPR76350.1
Extracellular ligand-binding receptor.
  
   0.667
EPR75679.1
SSU ribosomal protein S1p.
  
    0.663
atpD
ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
    0.548
EPR76752.1
Hypothetical protein.
  
 
 0.505
EPR76575.1
Ammonium transporter.
  
  
 0.476
EPR75046.1
Uroporphyrinogen III decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
  
  0.470
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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