Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR75448.1Transcriptional regulator, IclR family. (155 aa)    
Predicted Functional Partners:
EPR76073.1
Transcriptional regulator, IclR family.
  
     0.771
EPR76445.1
Transcriptional regulator, IclR family.
  
     0.759
EPR75318.1
Transcriptional regulator, IclR family.
  
     0.755
EPR75140.1
2-dehydro-3-deoxygluconate kinase.
 
     0.441
EPR76365.1
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit.
     
  0.425
EPR75450.1
Transcriptional regulator, GntR family.
  
    0.411
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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