Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EPR75431.1Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. (257 aa)    
Predicted Functional Partners:
der
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.978
cmk
Cytidylate kinase.
 
  
 0.978
EPR75432.1
Segregation and condensation protein B.
 
  
 0.965
EPR75433.1
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
  
 0.906
EPR75434.1
Chromosome (plasmid) partitioning protein ParA; Sporulation initiation inhibitor protein Soj.
       0.840
EPR75430.1
Arogenate dehydrogenase.
       0.793
EPR77467.1
Exodeoxyribonuclease III.
  
    0.726
EPR75607.1
Metal-dependent hydrolase.
  
    0.726
EPR75339.1
Exodeoxyribonuclease III.
  
    0.726
rplV
LSU ribosomal protein L22p (L17e); The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
  
 
   0.646
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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