Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR75387.1Hypothetical protein. (584 aa)    
Predicted Functional Partners:
EPR75386.1
Helicase.
 
     0.957
EPR75388.1
Hypothetical protein.
 
     0.957
EPR75385.1
DNA helicase IV.
 
     0.625
EPR75389.1
Hypothetical protein.
       0.488
EPR75390.1
Hypothetical protein.
       0.488
EPR77405.1
Uncharacterized protein encoded in hypervariable junctions of pilus.
  
     0.479
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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