Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EPR75281.1Thymidylate kinase. (645 aa)    
Predicted Functional Partners:
EPR75975.1
Hypothetical protein.
    
   0.724
EPR75905.1
arginyl-tRNA synthetase.
    
   0.724
EPR75402.1
Periplasmic protein TonB links inner and outer membranes-like protein.
    
   0.724
EPR75035.1
Hypothetical protein.
    
   0.724
EPR75282.1
Hypothetical protein.
  
    0.578
EPR76164.1
Mucin-associated surface protein.
   
  0.517
EPR75813.1
Beta-glucosidase.
    
 0.459
EPR77389.1
Lipolytic enzyme, G-D-S-L.
    
   0.430
EPR75634.1
Putative esterase.
    
   0.430
EPR75247.1
GDSL-like Lipase/Acylhydrolase domain protein.
    
   0.430
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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