Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EPR75193.1Dipeptide transport system permease protein DppB; TCDB 3.A.1.5.2; putative hemin permease. (338 aa)    
Predicted Functional Partners:
EPR75192.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 0.986
EPR75190.1
Oligopeptide transport ATP-binding protein OppF; TCDB 3.A.1.5.1.
 
  0.975
EPR75191.1
Oligopeptide transport ATP-binding protein OppD; TCDB 3.A.1.5.1; Belongs to the ABC transporter superfamily.
 
  0.975
EPR75194.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
 
 0.969
EPR75186.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
 0.963
EPR76180.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
 
 0.952
EPR76188.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 0.946
EPR76954.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
 
 0.945
EPR75711.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
 0.943
EPR75185.1
Dipeptide transport ATP-binding protein DppD; TCDB 3.A.1.5.2; Belongs to the ABC transporter superfamily.
 
 0.932
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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