Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR75061.1Transcriptional regulator, XRE family. (106 aa)    
Predicted Functional Partners:
EPR75060.1
HipA protein.
 
    0.942
EPR77505.1
HipA protein.
 
    0.740
EPR76885.1
Multi-domain regulatory protein.
  
     0.590
EPR76734.1
Putative transcriptional regulator.
  
     0.575
EPR75062.1
Pyridoxal kinase; Belongs to the pyridoxine kinase family.
       0.510
EPR76959.1
Hypothetical protein.
  
     0.475
EPR77491.1
Putative Clp protease subunit.
  
     0.468
EPR75499.1
Hypothetical protein.
  
     0.437
EPR76341.1
Hypothetical protein.
  
     0.432
EPR76060.1
Hypothetical protein.
  
     0.429
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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