rpmB protein (Leifsonia rubra) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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[Homology]

Score

rpmB

LSU ribosomal protein; Overlaps another CDS with the same product name; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)

Predicted Functional Partners:

rpmG

0.999

rpsN

0.998

rpsR

0.993

rpmF

0.991

rpsF

0.990

rplU

0.989

rpsT

0.989

rplM

0.988

EPR75643.1

0.988

rpsO

0.987

Your Current Organism:

Leifsonia rubra

NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPR75643.1	rplM	ADILRU_2186	ADILRU_1244	LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL31 family.	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.973
EPR75643.1	rplU	ADILRU_2186	ADILRU_0810	LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL31 family.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.979
EPR75643.1	rpmB	ADILRU_2186	ADILRU_2663	LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL31 family.	LSU ribosomal protein; Overlaps another CDS with the same product name; Belongs to the bacterial ribosomal protein bL28 family.	0.988
EPR75643.1	rpmF	ADILRU_2186	ADILRU_0641	LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL31 family.	LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.983
EPR75643.1	rpmG	ADILRU_2186	ADILRU_2664	LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL31 family.	LSU ribosomal protein; Overlaps another CDS with the same product name; Belongs to the bacterial ribosomal protein bL33 family.	0.982
EPR75643.1	rpsF	ADILRU_2186	ADILRU_2636	LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL31 family.	SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.	0.949
EPR75643.1	rpsN	ADILRU_2186	ADILRU_2665	LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL31 family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.910
EPR75643.1	rpsO	ADILRU_2186	ADILRU_0370	LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL31 family.	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.988
EPR75643.1	rpsR	ADILRU_2186	ADILRU_2638	LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL31 family.	SSU ribosomal protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.982
EPR75643.1	rpsT	ADILRU_2186	ADILRU_0853	LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL31 family.	SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.	0.986
rplM	EPR75643.1	ADILRU_1244	ADILRU_2186	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL31 family.	0.973
rplM	rplU	ADILRU_1244	ADILRU_0810	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rplM	rpmB	ADILRU_1244	ADILRU_2663	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein; Overlaps another CDS with the same product name; Belongs to the bacterial ribosomal protein bL28 family.	0.988
rplM	rpmF	ADILRU_1244	ADILRU_0641	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.991
rplM	rpmG	ADILRU_1244	ADILRU_2664	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein; Overlaps another CDS with the same product name; Belongs to the bacterial ribosomal protein bL33 family.	0.986
rplM	rpsF	ADILRU_1244	ADILRU_2636	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.	0.989
rplM	rpsN	ADILRU_1244	ADILRU_2665	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.998
rplM	rpsO	ADILRU_1244	ADILRU_0370	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997
rplM	rpsR	ADILRU_1244	ADILRU_2638	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.991
rplM	rpsT	ADILRU_1244	ADILRU_0853	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.	0.992