STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM27493.1Uncharacterized conserved protein. (118 aa)    
Predicted Functional Partners:
SHM27536.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.947
SHN23687.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.778
SHN44189.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.778
SHM54683.1
RNA polymerase sigma factor, sigma-70 family.
 
     0.777
SHM99173.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.777
SHN13012.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.777
SHN42764.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.777
SHN47194.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.776
SHN47213.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.773
SHN23675.1
Uncharacterized conserved protein.
  
     0.772
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.