STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM28970.1RNA polymerase sigma-70 factor, ECF subfamily. (175 aa)    
Predicted Functional Partners:
SHN45628.1
Hypothetical protein.
   
   0.831
SHM29014.1
Hypothetical protein.
       0.773
SHN35092.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.766
SHN44394.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.762
SHN47665.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.758
SHN32620.1
RNA polymerase sigma-70 factor, TIGR02947 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.749
SHN21115.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.746
SHM86989.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.745
SHN43616.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.740
SHN47217.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.727
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.