Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM50565.1 | SHM97350.1 | SAMN05443668_101750 | SAMN05443668_102373 | Hypothetical protein. | Helicase conserved C-terminal domain-containing protein. | 0.681 |
SHM50565.1 | SHN29857.1 | SAMN05443668_101750 | SAMN05443668_104618 | Hypothetical protein. | TIGR03089 family protein. | 0.721 |
SHM97350.1 | SHM50565.1 | SAMN05443668_102373 | SAMN05443668_101750 | Helicase conserved C-terminal domain-containing protein. | Hypothetical protein. | 0.681 |
SHM97350.1 | SHM97378.1 | SAMN05443668_102373 | SAMN05443668_102374 | Helicase conserved C-terminal domain-containing protein. | Multimeric flavodoxin WrbA. | 0.773 |
SHM97350.1 | SHM97436.1 | SAMN05443668_102373 | SAMN05443668_102376 | Helicase conserved C-terminal domain-containing protein. | DNA excision repair protein ERCC-3. | 0.799 |
SHM97350.1 | SHN29857.1 | SAMN05443668_102373 | SAMN05443668_104618 | Helicase conserved C-terminal domain-containing protein. | TIGR03089 family protein. | 0.608 |
SHM97350.1 | SHN42263.1 | SAMN05443668_102373 | SAMN05443668_108152 | Helicase conserved C-terminal domain-containing protein. | DNA polymerase-3 subunit epsilon. | 0.735 |
SHM97350.1 | rbpA-2 | SAMN05443668_102373 | SAMN05443668_113140 | Helicase conserved C-terminal domain-containing protein. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.690 |
SHM97350.1 | rpoA | SAMN05443668_102373 | SAMN05443668_105492 | Helicase conserved C-terminal domain-containing protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.611 |
SHM97350.1 | rpoB | SAMN05443668_102373 | SAMN05443668_105530 | Helicase conserved C-terminal domain-containing protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.611 |
SHM97350.1 | rpoC | SAMN05443668_102373 | SAMN05443668_105529 | Helicase conserved C-terminal domain-containing protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.611 |
SHM97350.1 | rpoZ | SAMN05443668_102373 | SAMN05443668_11155 | Helicase conserved C-terminal domain-containing protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.611 |
SHM97378.1 | SHM97350.1 | SAMN05443668_102374 | SAMN05443668_102373 | Multimeric flavodoxin WrbA. | Helicase conserved C-terminal domain-containing protein. | 0.773 |
SHM97436.1 | SHM97350.1 | SAMN05443668_102376 | SAMN05443668_102373 | DNA excision repair protein ERCC-3. | Helicase conserved C-terminal domain-containing protein. | 0.799 |
SHM97436.1 | rpoA | SAMN05443668_102376 | SAMN05443668_105492 | DNA excision repair protein ERCC-3. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
SHM97436.1 | rpoB | SAMN05443668_102376 | SAMN05443668_105530 | DNA excision repair protein ERCC-3. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
SHM97436.1 | rpoC | SAMN05443668_102376 | SAMN05443668_105529 | DNA excision repair protein ERCC-3. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.959 |
SHM97436.1 | rpoZ | SAMN05443668_102376 | SAMN05443668_11155 | DNA excision repair protein ERCC-3. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.995 |
SHN29857.1 | SHM50565.1 | SAMN05443668_104618 | SAMN05443668_101750 | TIGR03089 family protein. | Hypothetical protein. | 0.721 |
SHN29857.1 | SHM97350.1 | SAMN05443668_104618 | SAMN05443668_102373 | TIGR03089 family protein. | Helicase conserved C-terminal domain-containing protein. | 0.608 |
page 1 of 3