STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN20448.1Hypothetical protein. (282 aa)    
Predicted Functional Partners:
SHN46635.1
Glycerophosphoryl diester phosphodiesterase.
     0.882
SHN46197.1
PTS system, fructose subfamily, IIC component.
     
 0.848
SHN44251.1
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
      0.754
SHN20462.1
Polyhydroxybutyrate depolymerase.
       0.678
SHN47021.1
Endonuclease/Exonuclease/phosphatase family protein.
     0.604
SHN74032.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.569
SHN47444.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.569
SHN20475.1
Signal transduction histidine kinase.
       0.493
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.461
SHN27998.1
Xylose isomerase-like TIM barrel.
 
     0.443
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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