STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN20706.1Transcriptional regulator, RpiR family. (291 aa)    
Predicted Functional Partners:
SHN74032.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.719
SHN47444.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.719
SHN35417.1
Mannose-6-phosphate isomerase, type 1.
  
 
 0.598
SHN03191.1
Papain fold toxin 1, glutamine deamidase.
  
     0.576
SHN46197.1
PTS system, fructose subfamily, IIC component.
     
 0.569
SHN43598.1
Alpha-galactosidase.
  
 
 0.528
SHM22401.1
Fructoselysine-6-P-deglycase FrlB with duplicated sugar isomerase (SIS) domain.
 
  
  0.521
SHN20689.1
Hypothetical protein.
       0.520
SHN45858.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
  
 
 0.516
SHN34434.1
2-keto-3-deoxy-phosphogluconate aldolase.
    
 0.480
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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