STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN20901.1Type IV pilus assembly protein PilA. (159 aa)    
Predicted Functional Partners:
SHN20875.1
Type IV pilus assembly protein PilB.
 
 0.993
SHN20893.1
Type IV pilus assembly protein PilC.
 
  
 0.991
SHN20909.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.977
SHN20917.1
Type IV pilus assembly protein PilM.
 
  
 0.960
SHN20885.1
Twitching motility protein PilT.
 
   
 0.946
SHN20941.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
   
 0.872
SHN20933.1
Tfp pilus assembly protein PilO.
  
  
 0.826
SHN20926.1
Hypothetical protein.
  
  
 0.817
SHN20958.1
Ricin-type beta-trefoil lectin domain-containing protein.
     
 0.785
SHN20950.1
Hypothetical protein.
       0.770
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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