STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN29550.1propionyl-CoA carboxylase beta chain. (530 aa)    
Predicted Functional Partners:
SHN38363.1
Biotin carboxylase.
 
 0.995
SHN45393.1
Biotin carboxyl carrier protein /biotin carboxylase.
 
 0.995
SHN46724.1
acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.
 
 0.994
SHN29555.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase D.
  
 
 0.974
SHN39451.1
Urea carboxylase.
 
 0.954
SHN48082.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 0.948
SHM26228.1
methylmalonyl-CoA epimerase.
 
 
 0.947
SHN45382.1
BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.
 
 
 0.920
SHM67203.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
  
 
0.881
SHM98711.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
  
 
0.881
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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