Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM57610.1 | SHN28988.1 | SAMN05443668_101934 | SAMN05443668_104519 | Signal transduction histidine kinase. | Signal transduction histidine kinase. | 0.999 |
SHM57610.1 | SHN35933.1 | SAMN05443668_101934 | SAMN05443668_105457 | Signal transduction histidine kinase. | Tetratricopeptide (TPR) repeat. | 0.839 |
SHM57610.1 | SHN43327.1 | SAMN05443668_101934 | SAMN05443668_109117 | Signal transduction histidine kinase. | WD domain-containing protein, G-beta repeat-containing protein. | 0.972 |
SHM57610.1 | SHN46300.1 | SAMN05443668_101934 | SAMN05443668_114134 | Signal transduction histidine kinase. | WD domain-containing protein, G-beta repeat-containing protein. | 0.970 |
SHM57610.1 | htpG | SAMN05443668_101934 | SAMN05443668_12042 | Signal transduction histidine kinase. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.982 |
SHM57610.1 | rpoA | SAMN05443668_101934 | SAMN05443668_105492 | Signal transduction histidine kinase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.415 |
SHM57610.1 | rpoB | SAMN05443668_101934 | SAMN05443668_105530 | Signal transduction histidine kinase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.543 |
SHM57610.1 | rpoZ | SAMN05443668_101934 | SAMN05443668_11155 | Signal transduction histidine kinase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.462 |
SHN01873.1 | SHN35933.1 | SAMN05443668_102566 | SAMN05443668_105457 | WD40 repeat. | Tetratricopeptide (TPR) repeat. | 0.840 |
SHN01873.1 | SHN43327.1 | SAMN05443668_102566 | SAMN05443668_109117 | WD40 repeat. | WD domain-containing protein, G-beta repeat-containing protein. | 0.732 |
SHN01873.1 | SHN46300.1 | SAMN05443668_102566 | SAMN05443668_114134 | WD40 repeat. | WD domain-containing protein, G-beta repeat-containing protein. | 0.718 |
SHN01873.1 | alaS | SAMN05443668_102566 | SAMN05443668_11178 | WD40 repeat. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.890 |
SHN01873.1 | rpoA | SAMN05443668_102566 | SAMN05443668_105492 | WD40 repeat. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.696 |
SHN01873.1 | rpoB | SAMN05443668_102566 | SAMN05443668_105530 | WD40 repeat. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.682 |
SHN01873.1 | rpoZ | SAMN05443668_102566 | SAMN05443668_11155 | WD40 repeat. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.674 |
SHN28988.1 | SHM57610.1 | SAMN05443668_104519 | SAMN05443668_101934 | Signal transduction histidine kinase. | Signal transduction histidine kinase. | 0.999 |
SHN28988.1 | SHN35933.1 | SAMN05443668_104519 | SAMN05443668_105457 | Signal transduction histidine kinase. | Tetratricopeptide (TPR) repeat. | 0.822 |
SHN28988.1 | SHN43327.1 | SAMN05443668_104519 | SAMN05443668_109117 | Signal transduction histidine kinase. | WD domain-containing protein, G-beta repeat-containing protein. | 0.930 |
SHN28988.1 | htpG | SAMN05443668_104519 | SAMN05443668_12042 | Signal transduction histidine kinase. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.975 |
SHN28988.1 | rpoB | SAMN05443668_104519 | SAMN05443668_105530 | Signal transduction histidine kinase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.419 |
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