STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN75189.1ABC-2 family transporter protein. (513 aa)    
Predicted Functional Partners:
SHN75184.1
ABC-2 type transport system permease protein.
    
0.836
SHN75193.1
ABC-2 type transport system ATP-binding protein.
 
     0.824
SHN43094.1
Hypothetical protein.
 
     0.731
SHN43523.1
Putative ABC transport system permease protein.
  
     0.638
SHN06658.1
Hypothetical protein.
  
     0.624
SHN47359.1
Hypothetical protein.
  
     0.612
SHN44227.1
Cupin domain-containing protein.
 
     0.581
SHN47392.1
DNA-binding transcriptional regulator, MarR family.
  
     0.555
SHN75197.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.537
SHN75203.1
Signal transduction histidine kinase.
       0.537
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.