STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN74154.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (319 aa)    
Predicted Functional Partners:
SHN74160.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
     0.797
SHM72927.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
     0.763
SHM22980.1
Catechol-2,3-dioxygenase.
 
     0.754
SHN46745.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
     0.750
SHN24605.1
Kynurenine formamidase.
 
     0.733
SHN46741.1
Putative cyclase.
 
     0.725
SHM23156.1
Predicted arabinose efflux permease, MFS family.
  
     0.677
SHN74165.1
3alpha(or 20beta)-hydroxysteroid dehydrogenase.
 
     0.622
SHN43272.1
Hypothetical protein; Belongs to the cytochrome P450 family.
  
     0.453
SHN74170.1
Diamine N-acetyltransferase.
  
    0.452
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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