STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN75694.1GMC oxidoreductase. (227 aa)    
Predicted Functional Partners:
SHN42277.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
   
 
 0.894
SHN43466.1
Hypothetical protein.
  
 
 0.817
SHN19662.1
Hypothetical protein.
    
 0.771
SHN74084.1
DinB superfamily protein.
    
 0.771
SHN44923.1
Ankyrin repeat.
    
 0.771
SHN48074.1
Hypothetical protein.
    
 0.771
SHN15401.1
Choline dehydrogenase.
  
     0.737
SHM69184.1
Tetratricopeptide repeat-containing protein.
   
  0.664
SHM69304.1
Tetratricopeptide repeat-containing protein.
    
  0.659
SHM27655.1
Tetratricopeptide repeat-containing protein.
    
  0.659
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.