STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN42336.1Hypothetical protein. (65 aa)    
Predicted Functional Partners:
SHN02532.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.754
SHN33291.1
Hypothetical protein.
  
     0.737
SHN42339.1
Adenosylcobinamide kinase.
       0.659
SHN05382.1
Putative tRNA adenosine deaminase-associated protein.
  
     0.649
SHN45714.1
Predicted peroxiredoxin.
  
     0.621
SHN32471.1
Serine/threonine-protein kinase RsbW.
  
     0.620
SHN19832.1
Streptomyces sporulation and cell division protein, SsgA.
  
     0.617
SHM96675.1
Protein of unknown function.
  
     0.529
SHN32809.1
UDP-glucose 4-epimerase.
  
     0.528
SHM51454.1
Histidine kinase-like ATPase domain-containing protein.
  
     0.524
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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