STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN42460.1Transcriptional regulator, GntR family. (245 aa)    
Predicted Functional Partners:
SHN28829.1
Transcriptional regulator, GntR family.
  
     0.774
SHM62553.1
Transcriptional regulator, GntR family.
  
     0.769
SHN43533.1
Transcriptional regulator, GntR family.
  
    0.560
SHN42463.1
Hypothetical protein.
       0.534
SHN74139.1
Transcriptional regulator, AraC family.
  
    0.508
SHN12611.1
Transcriptional regulator, GntR family.
  
    0.478
SHN46247.1
AraC-type DNA-binding protein.
  
    0.442
SHN74032.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.440
SHN47444.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.440
SHM21926.1
Transcriptional attenuator, LytR family.
   
    0.431
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.