Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM26455.1 | SHN42716.1 | SAMN05443668_101152 | SAMN05443668_108323 | Thioredoxin. | Hypothetical protein. | 0.722 |
SHM96890.1 | SHN42716.1 | SAMN05443668_102356 | SAMN05443668_108323 | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | Hypothetical protein. | 0.740 |
SHM96890.1 | SHN45073.1 | SAMN05443668_102356 | SAMN05443668_111109 | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | Isopalmitoylresorcinol synthase. | 0.898 |
SHM96890.1 | ybeY | SAMN05443668_102356 | SAMN05443668_104185 | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.898 |
SHN05941.1 | SHN42716.1 | SAMN05443668_102767 | SAMN05443668_108323 | Thioredoxin; Belongs to the thioredoxin family. | Hypothetical protein. | 0.722 |
SHN13969.1 | SHN42716.1 | SAMN05443668_103139 | SAMN05443668_108323 | Hypothetical protein. | Hypothetical protein. | 0.722 |
SHN42716.1 | SHM26455.1 | SAMN05443668_108323 | SAMN05443668_101152 | Hypothetical protein. | Thioredoxin. | 0.722 |
SHN42716.1 | SHM96890.1 | SAMN05443668_108323 | SAMN05443668_102356 | Hypothetical protein. | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | 0.740 |
SHN42716.1 | SHN05941.1 | SAMN05443668_108323 | SAMN05443668_102767 | Hypothetical protein. | Thioredoxin; Belongs to the thioredoxin family. | 0.722 |
SHN42716.1 | SHN13969.1 | SAMN05443668_108323 | SAMN05443668_103139 | Hypothetical protein. | Hypothetical protein. | 0.722 |
SHN42716.1 | SHN44197.1 | SAMN05443668_108323 | SAMN05443668_110116 | Hypothetical protein. | Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. | 0.737 |
SHN42716.1 | SHN45073.1 | SAMN05443668_108323 | SAMN05443668_111109 | Hypothetical protein. | Isopalmitoylresorcinol synthase. | 0.740 |
SHN42716.1 | SHN46788.1 | SAMN05443668_108323 | SAMN05443668_11817 | Hypothetical protein. | Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. | 0.737 |
SHN42716.1 | rsmH | SAMN05443668_108323 | SAMN05443668_101381 | Hypothetical protein. | 16S rRNA (cytosine1402-N4)-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.740 |
SHN42716.1 | truA | SAMN05443668_108323 | SAMN05443668_105490 | Hypothetical protein. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.745 |
SHN42716.1 | ybeY | SAMN05443668_108323 | SAMN05443668_104185 | Hypothetical protein. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.747 |
SHN44197.1 | SHN42716.1 | SAMN05443668_110116 | SAMN05443668_108323 | Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. | Hypothetical protein. | 0.737 |
SHN44197.1 | SHN46788.1 | SAMN05443668_110116 | SAMN05443668_11817 | Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. | Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. | 0.952 |
SHN45073.1 | SHM96890.1 | SAMN05443668_111109 | SAMN05443668_102356 | Isopalmitoylresorcinol synthase. | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | 0.898 |
SHN45073.1 | SHN42716.1 | SAMN05443668_111109 | SAMN05443668_108323 | Isopalmitoylresorcinol synthase. | Hypothetical protein. | 0.740 |
page 1 of 2