Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM52033.1 | SHN42358.1 | SAMN05443668_101789 | SAMN05443668_108184 | Serpin (serine protease inhibitor). | Hypothetical protein. | 0.964 |
SHM52033.1 | SHN44689.1 | SAMN05443668_101789 | SAMN05443668_110325 | Serpin (serine protease inhibitor). | Putative peptidoglycan binding domain-containing protein. | 0.749 |
SHM52033.1 | SHN46300.1 | SAMN05443668_101789 | SAMN05443668_114134 | Serpin (serine protease inhibitor). | WD domain-containing protein, G-beta repeat-containing protein. | 0.643 |
SHM52033.1 | SHN46970.1 | SAMN05443668_101789 | SAMN05443668_11966 | Serpin (serine protease inhibitor). | Leucine-rich repeat (LRR) protein. | 0.501 |
SHM52033.1 | SHN47494.1 | SAMN05443668_101789 | SAMN05443668_12452 | Serpin (serine protease inhibitor). | Trypsin. | 0.964 |
SHN42358.1 | SHM52033.1 | SAMN05443668_108184 | SAMN05443668_101789 | Hypothetical protein. | Serpin (serine protease inhibitor). | 0.964 |
SHN42358.1 | SHN44689.1 | SAMN05443668_108184 | SAMN05443668_110325 | Hypothetical protein. | Putative peptidoglycan binding domain-containing protein. | 0.953 |
SHN42358.1 | SHN46300.1 | SAMN05443668_108184 | SAMN05443668_114134 | Hypothetical protein. | WD domain-containing protein, G-beta repeat-containing protein. | 0.650 |
SHN42358.1 | SHN46970.1 | SAMN05443668_108184 | SAMN05443668_11966 | Hypothetical protein. | Leucine-rich repeat (LRR) protein. | 0.636 |
SHN44689.1 | SHM52033.1 | SAMN05443668_110325 | SAMN05443668_101789 | Putative peptidoglycan binding domain-containing protein. | Serpin (serine protease inhibitor). | 0.749 |
SHN44689.1 | SHN42358.1 | SAMN05443668_110325 | SAMN05443668_108184 | Putative peptidoglycan binding domain-containing protein. | Hypothetical protein. | 0.953 |
SHN44689.1 | SHN46002.1 | SAMN05443668_110325 | SAMN05443668_113127 | Putative peptidoglycan binding domain-containing protein. | Dynamin family protein. | 0.723 |
SHN44689.1 | SHN46300.1 | SAMN05443668_110325 | SAMN05443668_114134 | Putative peptidoglycan binding domain-containing protein. | WD domain-containing protein, G-beta repeat-containing protein. | 0.634 |
SHN44689.1 | SHN46970.1 | SAMN05443668_110325 | SAMN05443668_11966 | Putative peptidoglycan binding domain-containing protein. | Leucine-rich repeat (LRR) protein. | 0.646 |
SHN44689.1 | SHN47494.1 | SAMN05443668_110325 | SAMN05443668_12452 | Putative peptidoglycan binding domain-containing protein. | Trypsin. | 0.953 |
SHN44689.1 | era | SAMN05443668_110325 | SAMN05443668_104182 | Putative peptidoglycan binding domain-containing protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.723 |
SHN44689.1 | rpsE | SAMN05443668_110325 | SAMN05443668_105504 | Putative peptidoglycan binding domain-containing protein. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.725 |
SHN44689.1 | rpsF | SAMN05443668_110325 | SAMN05443668_11897 | Putative peptidoglycan binding domain-containing protein. | Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.787 |
SHN44689.1 | rpsG | SAMN05443668_110325 | SAMN05443668_105525 | Putative peptidoglycan binding domain-containing protein. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.691 |
SHN46002.1 | SHN44689.1 | SAMN05443668_113127 | SAMN05443668_110325 | Dynamin family protein. | Putative peptidoglycan binding domain-containing protein. | 0.723 |
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