STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN45643.1Two-component system, OmpR family, sensor histidine kinase SenX3. (373 aa)    
Predicted Functional Partners:
SHM72111.1
PAS domain S-box-containing protein.
 
 0.991
SHM57610.1
Signal transduction histidine kinase.
 
0.986
SHN46759.1
PAS domain S-box-containing protein.
 
0.981
SHN45642.1
Two-component system, OmpR family, response regulator RegX3.
 0.978
SHM59652.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
 
 0.973
SHN28988.1
Signal transduction histidine kinase.
 
0.958
SHN47482.1
PAS domain S-box-containing protein.
 
 0.941
SHN75054.1
Signal transduction histidine kinase.
 
 
0.931
SHM31556.1
Response regulator receiver domain-containing protein.
 
 0.907
SHN42118.1
Response regulator receiver domain-containing protein.
 0.907
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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