STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN46160.1Uncharacterized membrane protein YbhN, UPF0104 family. (390 aa)    
Predicted Functional Partners:
SHN46159.1
Methyltransferase domain-containing protein.
 
    0.961
SHN46157.1
Hypothetical protein.
 
   
 0.956
SHN26691.1
Phosphoglycerol transferase MdoB.
  
 0.903
SHN23650.1
Hypothetical protein.
 
   
 0.814
SHN47040.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
 
    0.746
SHN21144.1
Predicted outer membrane protein.
  
     0.612
SHM92532.1
5-amino-6-(5-phosphoribosylamino)uracil reductase.
 
     0.579
SHN46172.1
Mg-chelatase subunit ChlD.
  
     0.495
SHN21211.1
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase.
 
     0.486
SHN75366.1
Protein of unknown function.
  
     0.453
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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