STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN46365.1Glycosyltransferase involved in cell wall bisynthesis. (807 aa)    
Predicted Functional Partners:
SHN46366.1
O-antigen ligase.
 
   
 0.859
SHN46368.1
Sulfotransferase domain-containing protein.
  
   0.855
SHN46367.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
 
 0.801
SHN46369.1
Hypothetical protein.
    
  0.749
SHN74103.1
Nucleoside-diphosphate-sugar epimerase.
 
 
 0.653
SHN46364.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
  0.617
SHN44517.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
 
 0.600
SHN47998.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.600
SHN47503.1
GtrA-like protein.
  
 
 0.589
SHN36636.1
Diguanylate cyclase/phosphodiesterase.
  
 
 0.574
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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