STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN46509.1Uncharacterized membrane protein HdeD, DUF308 family. (198 aa)    
Predicted Functional Partners:
SHN46510.1
S-adenosyl methyltransferase.
       0.538
SHN36967.1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
  
 0.528
SHN24949.1
Hypothetical protein.
 
     0.510
SHN46257.1
Phospholipase_D-nuclease N-terminal.
 
     0.507
SHN47126.1
Hypothetical protein.
  
     0.486
SHN47127.1
Protein of unknown function.
  
     0.473
SHN24876.1
Hypothetical protein.
 
     0.456
SHN46511.1
Transcriptional regulator, TetR family.
       0.442
SHM98869.1
L-2,4-diaminobutyrate decarboxylase.
   
  
 0.438
SHN20178.1
Glutamate or tyrosine decarboxylase.
   
  
 0.438
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.