STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN47028.1RNA polymerase sigma-70 factor, ECF subfamily. (343 aa)    
Predicted Functional Partners:
SHN29016.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.740
SHN46290.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.730
SHN47665.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.696
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.693
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.682
SHN44394.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.656
SHN27928.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.621
SHN38895.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.603
SHN21115.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.599
SHN47027.1
Dihydrofolate reductase.
       0.594
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.