STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN47358.1Hypothetical protein. (560 aa)    
Predicted Functional Partners:
SHN35563.1
Hypothetical protein.
 
     0.774
SHN44970.1
Hypothetical protein.
  
     0.771
SHN45694.1
Hypothetical protein.
  
     0.768
SHN02857.1
Hypothetical protein.
  
     0.767
SHN44146.1
Hypothetical protein.
 
     0.756
SHN26353.1
Hypothetical protein.
  
     0.744
SHN35492.1
Hypothetical protein.
 
     0.729
SHN26206.1
Hypothetical protein.
 
   
 0.724
SHN26136.1
Hypothetical protein.
  
     0.721
SHN35409.1
Hypothetical protein.
 
  
  0.712
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.