Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHN42100.1 | SHN47664.1 | SAMN05443668_10879 | SAMN05443668_12646 | Chemotaxis protein methyltransferase CheR. | Hypothetical protein. | 0.493 |
SHN42100.1 | SHN47665.1 | SAMN05443668_10879 | SAMN05443668_12647 | Chemotaxis protein methyltransferase CheR. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.493 |
SHN44391.1 | SHN47664.1 | SAMN05443668_110193 | SAMN05443668_12646 | Putative zinc-finger. | Hypothetical protein. | 0.544 |
SHN44391.1 | SHN47665.1 | SAMN05443668_110193 | SAMN05443668_12647 | Putative zinc-finger. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.544 |
SHN45369.1 | SHN47664.1 | SAMN05443668_1129 | SAMN05443668_12646 | Chemotaxis protein methyltransferase CheR. | Hypothetical protein. | 0.493 |
SHN45369.1 | SHN47665.1 | SAMN05443668_1129 | SAMN05443668_12647 | Chemotaxis protein methyltransferase CheR. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.493 |
SHN45628.1 | SHN47664.1 | SAMN05443668_112164 | SAMN05443668_12646 | Hypothetical protein. | Hypothetical protein. | 0.524 |
SHN45628.1 | SHN47665.1 | SAMN05443668_112164 | SAMN05443668_12647 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.524 |
SHN47664.1 | SHN42100.1 | SAMN05443668_12646 | SAMN05443668_10879 | Hypothetical protein. | Chemotaxis protein methyltransferase CheR. | 0.493 |
SHN47664.1 | SHN44391.1 | SAMN05443668_12646 | SAMN05443668_110193 | Hypothetical protein. | Putative zinc-finger. | 0.544 |
SHN47664.1 | SHN45369.1 | SAMN05443668_12646 | SAMN05443668_1129 | Hypothetical protein. | Chemotaxis protein methyltransferase CheR. | 0.493 |
SHN47664.1 | SHN45628.1 | SAMN05443668_12646 | SAMN05443668_112164 | Hypothetical protein. | Hypothetical protein. | 0.524 |
SHN47664.1 | SHN47665.1 | SAMN05443668_12646 | SAMN05443668_12647 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.722 |
SHN47664.1 | SHN47666.1 | SAMN05443668_12646 | SAMN05443668_12648 | Hypothetical protein. | Dihydrofolate reductase. | 0.436 |
SHN47664.1 | rpoA | SAMN05443668_12646 | SAMN05443668_105492 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.579 |
SHN47664.1 | rpoB | SAMN05443668_12646 | SAMN05443668_105530 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.682 |
SHN47664.1 | rpoC | SAMN05443668_12646 | SAMN05443668_105529 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.693 |
SHN47664.1 | rpoZ | SAMN05443668_12646 | SAMN05443668_11155 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.578 |
SHN47665.1 | SHN42100.1 | SAMN05443668_12647 | SAMN05443668_10879 | RNA polymerase sigma-70 factor, ECF subfamily. | Chemotaxis protein methyltransferase CheR. | 0.493 |
SHN47665.1 | SHN44391.1 | SAMN05443668_12647 | SAMN05443668_110193 | RNA polymerase sigma-70 factor, ECF subfamily. | Putative zinc-finger. | 0.544 |
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