STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN47891.1Protein of unknown function. (231 aa)    
Predicted Functional Partners:
SHN47841.1
Glycosyl transferase family 21.
    
 0.578
SHN47889.1
AAA domain-containing protein.
       0.556
SHN47890.1
Hypothetical protein.
       0.556
SHN46934.1
SnoaL-like polyketide cyclase.
  
     0.520
cmk
Cytidylate kinase.
       0.509
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.509
SHN47894.1
DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit.
       0.509
SHN47895.1
Ferredoxin-NADP reductase.
       0.509
SHN42715.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
  
 
  0.489
SHN48067.1
Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family.
  
  
 0.486
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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