STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN48094.1Glucuronate isomerase. (463 aa)    
Predicted Functional Partners:
SHN48097.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
 
 0.973
SHN14546.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
 
 0.972
SHN48096.1
Altronate hydrolase.
  
 0.942
SHN14571.1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.862
SHN47884.1
alpha-N-arabinofuranosidase.
     
 0.767
SHN43110.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.743
SHN14631.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.742
SHN39510.1
Glycosyl hydrolases family 2; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.741
SHN45243.1
Beta-galactosidase.
 
 
 0.734
SHN04534.1
L-fuculose 1-phosphate aldolase.
 
  
 0.728
Your Current Organism:
Cryptosporangium aurantiacum
NCBI taxonomy Id: 134849
Other names: Actinoplanes aurantiacus, C. aurantiacum, DSM 46144, IFO 13967, IMET 9261, IMSNU 22120, JCM 3241, KCC A-0241, KCTC 9529, NBRC 13967, NCIMB 12649, NRRL B-16698, strain 71-C38
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