STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHK90206.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)    
Predicted Functional Partners:
KHK90204.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.984
KHK90207.1
DoxX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.970
KHK90209.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.865
KHK90208.1
ECF subfamily RNA polymerase sigma-24 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.863
KHK90631.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.829
KHK93226.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.814
KHK91394.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.788
KHK90205.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.784
KHK93227.1
Type I secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.551
KHK92666.1
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.
   
    0.550
Your Current Organism:
Novosphingobium malaysiense
NCBI taxonomy Id: 1348853
Other names: DSM 27798, MCCC 1A00645, N. malaysiense, NBRC 109947, Novosphingobium malaysiense Lee et al. 2014, Novosphingobium sp. 273, strain MUSC 273
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