STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001570905_00857Unannotated protein. (253 aa)    
Predicted Functional Partners:
GCA_001570905_01293
Unannotated protein.
     
 0.653
GCA_001570905_00856
Unannotated protein.
       0.527
GCA_001570905_00183
Unannotated protein.
    
 
 0.491
GCA_001570905_00855
Unannotated protein.
       0.452
Your Current Organism:
Zimmermannella alba
NCBI taxonomy Id: 1349786
Other names: Pseudoclavibacter sp. DSM 17449, Pseudoclavibacter sp. JCM 12865, Zimmermannella alba NBRC 15616, [. alba NBRC 15616, [Zimmermannella] alba NBRC 15616
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.