STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001570925_00501Unannotated protein. (167 aa)    
Predicted Functional Partners:
GCA_001570925_00230
Unannotated protein.
 
  
 0.988
GCA_001570925_00259
Unannotated protein.
 
  
 0.978
GCA_001570925_00761
Unannotated protein.
     
 0.973
GCA_001570925_00495
Unannotated protein.
 
  
 0.931
GCA_001570925_00500
Unannotated protein.
       0.773
GCA_001570925_00502
Unannotated protein.
       0.742
GCA_001570925_00499
Unannotated protein.
       0.719
GCA_001570925_00073
Unannotated protein.
 
   
 0.690
GCA_001570925_00790
Unannotated protein.
 
   
 0.677
GCA_001570925_00498
Unannotated protein.
       0.670
Your Current Organism:
Zimmermannella bifida
NCBI taxonomy Id: 1349787
Other names: Pseudoclavibacter sp. DSM 17450, Pseudoclavibacter sp. JCM 12920, Zimmermannella bifida NBRC 103089, [. bifida NBRC 103089, [Zimmermannella] bifida NBRC 103089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.